NCBI Blast:gb|<a href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&id=AAV80759">AAV80759</a>| (302 letters)

BLASTP 2.2.21+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro
A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new
generation of protein database search programs", Nucleic
Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen
F. Altschul, John C. Wootton, E. Michael Gertz, Richa
Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and
Yi-Kuo Yu (2005) "Protein database searches using
compositionally adjusted substitution matrices", FEBS J.
272:5101-5109.


RID: 3H9HKFT0013


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
           9,090,450 sequences; 3,112,979,771 total letters
Query= gi|56159895|gb|AAV80759.1| putative fucosyltransferase [Escherichia
coli] >gi|56384983|gb|AAV85963.1| WcmD [Escherichia coli]
Length=302


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gb|AAV80759.1|  putative fucosyltransferase [Escherichia coli]...   629    1e-180
gb|AAO37719.1|  putative fucosyltransferase [Escherichia coli]      628    3e-180
ref|YP_002329683.1|  predicted fucosyltransferase [Escherichia...   293    2e-79 
gb|AAO37698.1|  putative fucosyltransferase [Escherichia coli]      145    4e-35 
gb|AAL67556.1|AF461121_7  putative fucosyltransferase WbgN [Es...   119    3e-27 
gb|ABE98421.1|  glycosyltransferase [Escherichia coli]              112    6e-25 

ALIGNMENTS
>gb|AAV80759.1| putative fucosyltransferase [Escherichia coli]
 gb|AAV85963.1| WcmD [Escherichia coli]
Length=302

 Score =  629 bits (1622),  Expect = 1e-180, Method: Compositional matrix adjust.
 Identities = 302/302 (100%), Positives = 302/302 (100%), Gaps = 0/302 (0%)

Query  1    MYSCLSGGLGNQMFQYAAAYILQRKLKQRSLVLDDSYFLDCSNRDTRRRFELNQFNICYD  60
            MYSCLSGGLGNQMFQYAAAYILQRKLKQRSLVLDDSYFLDCSNRDTRRRFELNQFNICYD
Sbjct  1    MYSCLSGGLGNQMFQYAAAYILQRKLKQRSLVLDDSYFLDCSNRDTRRRFELNQFNICYD  60

Query  61   RLTTSKEKKEISIIRHVNRYRLPLFVTNSIFGVLLKKNYLPEAKFYEFLNNCKLQVKNGY  120
            RLTTSKEKKEISIIRHVNRYRLPLFVTNSIFGVLLKKNYLPEAKFYEFLNNCKLQVKNGY
Sbjct  61   RLTTSKEKKEISIIRHVNRYRLPLFVTNSIFGVLLKKNYLPEAKFYEFLNNCKLQVKNGY  120

Query  121  CLFSYFQDATLIDSHRDMILPLFQINEDLLNLCNDLHIYKKVICENANTTSLHIRRGDYI  180
            CLFSYFQDATLIDSHRDMILPLFQINEDLLNLCNDLHIYKKVICENANTTSLHIRRGDYI
Sbjct  121  CLFSYFQDATLIDSHRDMILPLFQINEDLLNLCNDLHIYKKVICENANTTSLHIRRGDYI  180

Query  181  TNPHASKFHGVLPMDYYEKAIRYIEDVQGEQVIIVFSDDVKWAENTFANQPNYYVVNNSE  240
            TNPHASKFHGVLPMDYYEKAIRYIEDVQGEQVIIVFSDDVKWAENTFANQPNYYVVNNSE
Sbjct  181  TNPHASKFHGVLPMDYYEKAIRYIEDVQGEQVIIVFSDDVKWAENTFANQPNYYVVNNSE  240

Query  241  CEYSAIDMFLMSKCKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWFAGNNKSKLTMDSWI  300
            CEYSAIDMFLMSKCKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWFAGNNKSKLTMDSWI
Sbjct  241  CEYSAIDMFLMSKCKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWFAGNNKSKLTMDSWI  300

Query  301  NL  302
            NL
Sbjct  301  NL  302


>gb|AAO37719.1| putative fucosyltransferase [Escherichia coli]
Length=302

 Score =  628 bits (1619),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 301/302 (99%), Positives = 302/302 (100%), Gaps = 0/302 (0%)

Query  1    MYSCLSGGLGNQMFQYAAAYILQRKLKQRSLVLDDSYFLDCSNRDTRRRFELNQFNICYD  60
            MYSCLSGGLGNQMFQYAAAYILQRKLKQRSLVLDDSYFLDCSNRDTRRRFELNQFNICYD
Sbjct  1    MYSCLSGGLGNQMFQYAAAYILQRKLKQRSLVLDDSYFLDCSNRDTRRRFELNQFNICYD  60

Query  61   RLTTSKEKKEISIIRHVNRYRLPLFVTNSIFGVLLKKNYLPEAKFYEFLNNCKLQVKNGY  120
            RLTTSKEKKEISIIRHVNRYRLPLFVTNSIFGVLLKKNYLPEAKFYEFLNNCKLQVKNGY
Sbjct  61   RLTTSKEKKEISIIRHVNRYRLPLFVTNSIFGVLLKKNYLPEAKFYEFLNNCKLQVKNGY  120

Query  121  CLFSYFQDATLIDSHRDMILPLFQINEDLLNLCNDLHIYKKVICENANTTSLHIRRGDYI  180
            CLFSYFQDATLIDSHRDMILPLFQINEDLL+LCNDLHIYKKVICENANTTSLHIRRGDYI
Sbjct  121  CLFSYFQDATLIDSHRDMILPLFQINEDLLHLCNDLHIYKKVICENANTTSLHIRRGDYI  180

Query  181  TNPHASKFHGVLPMDYYEKAIRYIEDVQGEQVIIVFSDDVKWAENTFANQPNYYVVNNSE  240
            TNPHASKFHGVLPMDYYEKAIRYIEDVQGEQVIIVFSDDVKWAENTFANQPNYYVVNNSE
Sbjct  181  TNPHASKFHGVLPMDYYEKAIRYIEDVQGEQVIIVFSDDVKWAENTFANQPNYYVVNNSE  240

Query  241  CEYSAIDMFLMSKCKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWFAGNNKSKLTMDSWI  300
            CEYSAIDMFLMSKCKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWFAGNNKSKLTMDSWI
Sbjct  241  CEYSAIDMFLMSKCKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWFAGNNKSKLTMDSWI  300

Query  301  NL  302
            NL
Sbjct  301  NL  302


>ref|YP_002329683.1| predicted fucosyltransferase [Escherichia coli O127:H6 str. E2348/69]
 gb|AAR90894.1| putative fucosyltransferase [Escherichia coli]
 emb|CAS09719.1| predicted fucosyltransferase [Escherichia coli O127:H6 str. E2348/69]
Length=299

 Score =  293 bits (750),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 148/304 (48%), Positives = 204/304 (67%), Gaps = 8/304 (2%)

Query  1    MYSCLSGGLGNQMFQYAAAYILQRKLKQRSLVLDDSYFLDCSNRDTRRRFELNQFNICYD  60
            MY CLSGGLGNQMFQYAAAYIL++      LVLDDSY+ +   +DT R  EL+QF I +D
Sbjct  2    MYCCLSGGLGNQMFQYAAAYILKQHFPDTILVLDDSYYFNQPQKDTIRHLELDQFKIIFD  61

Query  61   RLTTSKEKKEISIIRHVNRYRLPLFVTNSIFGV--LLKKNYLPEAKFYEFLNNCKLQVKN  118
            R ++  EK +I+ +R     ++PL  +   F    L  K  L +A +Y   N   ++  +
Sbjct  62   RFSSKDEKVKINRLR--KHKKIPLLNSFLQFTAIKLCNKYSLNDASYY---NPESIKNID  116

Query  119  GYCLFSYFQDATLIDSHRDMILPLFQINEDLLNLCNDLHIYKKVICENANTTSLHIRRGD  178
              CLFS++QD+ L++ HRD+ILPLF+I +DL  LC++L IY  +I ++ N TS+H+RRGD
Sbjct  117  VACLFSFYQDSKLLNEHRDLILPLFEIRDDLRVLCHNLQIYS-LITDSKNITSIHVRRGD  175

Query  179  YITNPHASKFHGVLPMDYYEKAIRYIEDVQGEQVIIVFSDDVKWAENTFANQPNYYVVNN  238
            Y+ N HA+KFHG L MDYY  A+ YIE   G Q  I+F+DDV WA+  F+   N  V + 
Sbjct  176  YVNNKHAAKFHGTLSMDYYISAMEYIESECGSQTFIIFTDDVIWAKEKFSKYSNCLVADA  235

Query  239  SECEYSAIDMFLMSKCKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWFAGNNKSKLTMDS  298
             E ++S IDM+LMS C NNIIANSTYSWWGAWLN  EDK+V++P++W+   N+  L  ++
Sbjct  236  DENKFSVIDMYLMSLCNNNIIANSTYSWWGAWLNRSEDKLVIAPKQWYISGNECSLKNEN  295

Query  299  WINL  302
            WI +
Sbjct  296  WIAM  299


>gb|AAO37698.1| putative fucosyltransferase [Escherichia coli]
Length=283

 Score =  145 bits (367),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 161/302 (53%), Gaps = 31/302 (10%)

Query  7    GGLGNQMFQYAAAYILQRKLKQRSLVLDDSYFLDCSNRDTR--RRFELNQFNICYDRLTT  64
            GGLGNQMFQYA A+ + ++  Q +L +D S   D     T   R  EL+    C      
Sbjct  7    GGLGNQMFQYATAFAIAKRTHQ-NLTVDIS---DAVKYKTHPLRLVELS----CSSEFV-  57

Query  65   SKEKKEISIIRHVNRYRLPLFVTNSIFGVLLKKNYLPEAKFYEFLNNCKLQVKNGYCLFS  124
               KK     +++   ++P F+   +F    +K+Y+ ++  Y+   + K   K    +  
Sbjct  58   ---KKAWPFEKYLFSEKIPHFMKKGMF----RKHYVEKSLEYDPDIDTKSINKK---IVG  107

Query  125  YFQDATLIDSHRDMILPLFQINEDLLNLCNDLHIYKKVICENANTTSLHIRRGDYITNPH  184
            YFQ        R  ++  FQ      +  N+L     +I EN +T SLHIRRGDY+++  
Sbjct  108  YFQTEKYFKEFRHELIKEFQPKTKFNSYQNELL---NLIKEN-DTCSLHIRRGDYVSSKI  163

Query  185  ASKFHGVLPMDYYEKAIRYIED---VQGEQVIIVFSDDVKWA-ENTFANQPNYYVVNNSE  240
            A++ HG     Y+E+AI Y+ +   +  + ++ +FSDD+KW  EN F N    +V    +
Sbjct  164  ANETHGTCSEKYFERAIDYLMNKGVINKKTLLFIFSDDIKWCRENIFFNNQICFV--QGD  221

Query  241  CEYSAIDMFLMSKCKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWFAGNNKSKLTMDSWI  300
              +  +DM LMSKCKNNII+NS++SWW AWLN  ++K V++P KWF  + K  +  +SW+
Sbjct  222  AYHVELDMLLMSKCKNNIISNSSFSWWAAWLNENKNKTVIAPSKWFKKDIKHDIIPESWV  281

Query  301  NL  302
             L
Sbjct  282  KL  283


>gb|AAL67556.1|AF461121_7 putative fucosyltransferase WbgN [Escherichia coli]
 dbj|BAG11841.1| putative fucosyltransferase [Escherichia coli O55:H7]
 dbj|BAG11899.1| putative fucosyltransferase WbgN [Escherichia coli O55:H7]
 dbj|BAG11955.1| putative fucosyltransferase WbgN [Escherichia coli O55:H6]
Length=290

 Score =  119 bits (299),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 138/291 (47%), Gaps = 37/291 (12%)

Query  5    LSGGLGNQMFQYAAAYILQRKLKQRSLVLDDSYFLDCSNRDTRRRFELNQFNICYDRLTT  64
            L+GGLGNQMFQYA  Y  +   +  SL LD        N      F L++ NI    + +
Sbjct  8    LAGGLGNQMFQYAKGYA-ESVERNSSLKLD---LRGYKNYTLHGGFRLDKLNIDNTFVMS  63

Query  65   SKEKKEIS--IIRHVNRYRLPLFVTNSIFGVLLKKNYLPEAKFYEFLNNCKLQVKNGYCL  122
             KE       I+R +N++  P          L  K +  E    ++       +K     
Sbjct  64   KKEMCIFPNFIVRAINKF--PKLS-------LCSKRFESE----QYSKKINGSMKGSVEF  110

Query  123  FSYFQDATLIDSHRDMILPLF---QINEDLLNLCNDLHIYKKVICENANTTSLHIRRGDY  179
              ++Q+      H++ +  +F    IN D   L +        +    N+ S+HIRRGDY
Sbjct  111  IGFWQNERYFLEHKEKLREIFTPININLDAKELSD--------VIRCTNSVSVHIRRGDY  162

Query  180  ITNPHASKFHGVLPMDYYEKAIRYIEDVQGEQVIIVFSDDVKWAE----NTFANQPNYYV  235
            ++N  A K HG+    YY  +IRY+++     V  VFSDD++W +      F+   +   
Sbjct  163  VSNVEALKIHGLCTERYYIDSIRYLKERFNNLVFFVFSDDIEWCKKYKNEIFSRSDDVKF  222

Query  236  VNNSECEYSAIDMFLMSKCKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWF  286
            +  +  E   +DM+LMS  K +IIANS++SWWGAWL  ++  I ++P  WF
Sbjct  223  IEGNTQE---VDMWLMSNAKYHIIANSSFSWWGAWLKNYDLGITIAPTPWF  270


>gb|ABE98421.1| glycosyltransferase [Escherichia coli]
Length=297

 Score =  112 bits (279),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 144/317 (45%), Gaps = 50/317 (15%)

Query  5    LSGGLGNQMFQYAAAYILQRKLKQRSLVLDDSYFLDCSNRDTRRRFELNQFNICYDRLTT  64
            L GGLGNQ+FQ++  Y L  K+    L  D S++   +  D    + LN   I  + L  
Sbjct  6    LQGGLGNQLFQFSFGYALS-KINGTPLYFDISHY---AENDDHGGYRLNNLQIPEEYL--  59

Query  65   SKEKKEISIIRHVNRYRLPLFVTNSIFGVLLKKNYLPEAKFYEFLNNCKLQVKNGYCL--  122
                          +Y  P    N+I+ +L++ + L    F  FL  C      GY    
Sbjct  60   --------------QYYTP--KINNIYKLLVRGSRLYPDIFL-FLGFCNEFHAYGYDFEY  102

Query  123  ----------FSYFQDATLIDSH----RDMILPLFQINEDLLNLCNDLHIYKKVICENAN  168
                        Y+Q       H    ++  +P         N+    ++    I E+ +
Sbjct  103  IAQKWKSKKYIGYWQSEHFFHKHILDLKEFFIPK--------NVSEQANLLAAKILESQS  154

Query  169  TTSLHIRRGDYITNPHASKFHGVLPMDYYEKAIRYIEDVQGEQVIIVFSDDVKW-AENTF  227
            + S+HIRRGDYI N  A+  HGV  ++YY+KA+  I D+   + + +FSDD+ W  EN  
Sbjct  155  SLSIHIRRGDYIKNKTATLTHGVCSLEYYKKALNKIRDLAMIRDVFIFSDDIFWCKENIE  214

Query  228  ANQPNYYVVNNSECEYSAIDMFLMSKCKNNIIANSTYSWWGAWLNTFEDKIVVSPRKWF-  286
                  Y +  SE      D++LMS   ++IIANS++SWWGA+L +   +IV+ P  W+ 
Sbjct  215  TLLSKKYNIYYSEDLSQEEDLWLMSLANHHIIANSSFSWWGAYLGSSASQIVIYPTPWYD  274

Query  287  -AGNNKSKLTMDSWINL  302
                N     ++ WIN+
Sbjct  275  ITPKNTYIPIVNHWINV  291



  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Jun 16, 2009  5:41 PM
  Number of letters in database: 26,573,871
  Number of sequences in database:  84,272

Lambda     K      H
   0.323    0.137    0.428 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 84272
Number of Hits to DB: 418252
Number of extensions: 17014
Number of successful extensions: 46
Number of sequences better than 0.1: 1
Number of HSP's better than 0.1 without gapping: 0
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 26573871
Length adjustment: 103
Effective length of query: 199
Effective length of database: 17893855
Effective search space: 3560877145
Effective search space used: 3560877145
T: 11
A: 40
X1: 16 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 80 (35.4 bits)
Job Title: gb|AAV80759| (302 letters)
