BLASTP 2.2.21+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro
A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new
generation of protein database search programs", Nucleic
Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen
F. Altschul, John C. Wootton, E. Michael Gertz, Richa
Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and
Yi-Kuo Yu (2005) "Protein database searches using
compositionally adjusted substitution matrices", FEBS J.
272:5101-5109.


RID: 3HA5G43S01S


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
           9,090,450 sequences; 3,112,979,771 total letters
Query= gi|168481266|gb|ACA24759.1| WfdR [Escherichia coli]
Length=305


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gb|ACA24759.1|  WfdR [Escherichia coli]                             624    6e-179
gb|ACD37044.1|  WfdG [Escherichia coli]                             155    6e-38 

ALIGNMENTS
>gb|ACA24759.1| WfdR [Escherichia coli]
Length=305

 Score =  624 bits (1608),  Expect = 6e-179, Method: Compositional matrix adjust.
 Identities = 305/305 (100%), Positives = 305/305 (100%), Gaps = 0/305 (0%)

Query  1    MNRKNLSMKLMYILYNIKYLLKCFVVLITPDSLIIKKQFLEYQGYPLGLNNPKALNQKLQ  60
            MNRKNLSMKLMYILYNIKYLLKCFVVLITPDSLIIKKQFLEYQGYPLGLNNPKALNQKLQ
Sbjct  1    MNRKNLSMKLMYILYNIKYLLKCFVVLITPDSLIIKKQFLEYQGYPLGLNNPKALNQKLQ  60

Query  61   WLKLNDRTLLHTICADKIRVREYVENRLGTRDNIIDLLKVYDTPFDITFESLPQGKFVIK  120
            WLKLNDRTLLHTICADKIRVREYVENRLGTRDNIIDLLKVYDTPFDITFESLPQGKFVIK
Sbjct  61   WLKLNDRTLLHTICADKIRVREYVENRLGTRDNIIDLLKVYDTPFDITFESLPQGKFVIK  120

Query  121  SNHYCGDYFIVRDKNLLNIDEVKWKFIRTLNCNIYHHGREWQYKNIDRRIIVERLLEDEA  180
            SNHYCGDYFIVRDKNLLNIDEVKWKFIRTLNCNIYHHGREWQYKNIDRRIIVERLLEDEA
Sbjct  121  SNHYCGDYFIVRDKNLLNIDEVKWKFIRTLNCNIYHHGREWQYKNIDRRIIVERLLEDEA  180

Query  181  GKVPNDIKIHCFNGEPKFIYVSLDREGGNYRSIYDTSWNMLDFCWARRGKDLSKFNVKNI  240
            GKVPNDIKIHCFNGEPKFIYVSLDREGGNYRSIYDTSWNMLDFCWARRGKDLSKFNVKNI
Sbjct  181  GKVPNDIKIHCFNGEPKFIYVSLDREGGNYRSIYDTSWNMLDFCWARRGKDLSKFNVKNI  240

Query  241  SKPSQLENALNISKKLSQGFKYLRVDLYLVQEKIYVGELTFHQGSGYDKITPFEWDERLG  300
            SKPSQLENALNISKKLSQGFKYLRVDLYLVQEKIYVGELTFHQGSGYDKITPFEWDERLG
Sbjct  241  SKPSQLENALNISKKLSQGFKYLRVDLYLVQEKIYVGELTFHQGSGYDKITPFEWDERLG  300

Query  301  KELKL  305
            KELKL
Sbjct  301  KELKL  305


>gb|ACD37044.1| WfdG [Escherichia coli]
Length=284

 Score =  155 bits (391),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 157/294 (53%), Gaps = 24/294 (8%)

Query  18   KYLLKCFVVLITPDSLIIKKQFLEYQGYPLGLNNPKALNQKLQWLKLNDRTLLHTICADK  77
            +Y+L  F     PD+L I+ ++ +     L L  PK   +K+ W KL     L TICADK
Sbjct  4    RYILNLF-----PDTLFIRLRYFKRFKRILHLRKPKRFTEKIMWYKLFYHDNLMTICADK  58

Query  78   IRVREYVENRLGTRDNIIDLLKVYDTPFDITFESLPQGKFVIKSNHYCGDYFIVRDKNLL  137
             RVREY++ + G  D ++ L KVY+TP +I  + LP  +F++K N+      +VRDK+  
Sbjct  59   YRVREYIKEK-GFGDILVPLFKVYNTPDEIKIDELP-CQFILKGNNGSETNLVVRDKS--  114

Query  138  NIDEVKWKFIRTL------NCNIYHHGREWQYKNIDRRIIVERLLEDEAGKVPNDIKIHC  191
               ++  K+IR +      N  +   G+EW Y+NI+ +I VE+LLE E     +D K  C
Sbjct  115  ---KITEKYIRHIVSGWMANNQVITLGKEWCYQNIEFKITVEQLLESEGEDGIDDYKFLC  171

Query  192  FNGEPKFIYVSLDREGGNYRSIYDTSWNMLDFCWARRGKDLSKFNVKNISKPSQLENALN  251
            FNG   +I+V  +R   + R+ +D  WN+++          S      I KP   E  L+
Sbjct  172  FNGRVHYIWVDKNRFTSHTRTFFDRDWNVINVESDHPAASFS------IDKPWGFERMLH  225

Query  252  ISKKLSQGFKYLRVDLYLVQEKIYVGELTFHQGSGYDKITPFEWDERLGKELKL  305
            I++ + + F + RVD Y V +K+Y GE+TF+  SG  +  P  +D  +G +  L
Sbjct  226  IAEDIGKDFPFARVDFYSVNKKVYFGEITFYPWSGMVQFQPDSFDFDMGDKFIL  279



  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Jun 15, 2009  5:41 PM
  Number of letters in database: 26,570,333
  Number of sequences in database:  84,251

Lambda     K      H
   0.323    0.142    0.438 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 84251
Number of Hits to DB: 1385100
Number of extensions: 58435
Number of successful extensions: 93
Number of sequences better than 0.1: 0
Number of HSP's better than 0.1 without gapping: 0
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 0
Length of query: 305
Length of database: 26570333
Length adjustment: 103
Effective length of query: 202
Effective length of database: 17892480
Effective search space: 3614280960
Effective search space used: 3614280960
T: 11
A: 40
X1: 16 (7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 80 (35.4 bits)