NCBI Blast:gb|<a href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&id=AAZ20765">AAZ20765</a>| (331 letters)

BLASTP 2.2.21+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro
A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new
generation of protein database search programs", Nucleic
Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen
F. Altschul, John C. Wootton, E. Michael Gertz, Richa
Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and
Yi-Kuo Yu (2005) "Protein database searches using
compositionally adjusted substitution matrices", FEBS J.
272:5101-5109.


RID: 3H8FBTXF013


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
           9,090,450 sequences; 3,112,979,771 total letters
Query= gi|71044445|gb|AAZ20765.1| glycosyltransferase [Escherichia coli]
Length=331


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gb|AAZ20765.1|  glycosyltransferase [Escherichia coli]              666    0.0  
ref|YP_002391830.1|  hypothetical protein ECS88_2135 [Escheric...   186    3e-47
gb|AAX07749.1|  unknown [Escherichia coli]                          159    6e-39
ref|YP_001463381.1|  hypothetical protein EcE24377A_2321 [Esch...  43.9    3e-04
ref|NP_418086.1|  lipopolysaccharide core biosynthesis protein...  40.8    0.002
ref|YP_002331339.1|  lipopolysaccharide core biosynthesis prot...  40.8    0.002

ALIGNMENTS
>gb|AAZ20765.1| glycosyltransferase [Escherichia coli]
Length=331

 Score =  666 bits (1718),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 331/331 (100%), Positives = 331/331 (100%), Gaps = 0/331 (0%)

Query  1    MIKTRENGFVSDVKNVLIFCPKFFNYDINIRNAVQKNGYTVSLFNERPFDNIIGRALIRL  60
            MIKTRENGFVSDVKNVLIFCPKFFNYDINIRNAVQKNGYTVSLFNERPFDNIIGRALIRL
Sbjct  1    MIKTRENGFVSDVKNVLIFCPKFFNYDINIRNAVQKNGYTVSLFNERPFDNIIGRALIRL  60

Query  61   GFDFFLKRQIFKYYKNIYDNIFADIDYLIVINPECITPEILEIYRNKCNNIIVYMWDSFE  120
            GFDFFLKRQIFKYYKNIYDNIFADIDYLIVINPECITPEILEIYRNKCNNIIVYMWDSFE
Sbjct  61   GFDFFLKRQIFKYYKNIYDNIFADIDYLIVINPECITPEILEIYRNKCNNIIVYMWDSFE  120

Query  121  NKPQAKKLIRHADLFYTFDPNDAKNNNIIFKPLFYTKAYREIPSKPQLEYDISFIGTIHS  180
            NKPQAKKLIRHADLFYTFDPNDAKNNNIIFKPLFYTKAYREIPSKPQLEYDISFIGTIHS
Sbjct  121  NKPQAKKLIRHADLFYTFDPNDAKNNNIIFKPLFYTKAYREIPSKPQLEYDISFIGTIHS  180

Query  181  SRYQYVKSIATVKNKFIFFYCPSLFVFLFKKYIAREIECIKLKDVSFKSLSESEVLNVIK  240
            SRYQYVKSIATVKNKFIFFYCPSLFVFLFKKYIAREIECIKLKDVSFKSLSESEVLNVIK
Sbjct  181  SRYQYVKSIATVKNKFIFFYCPSLFVFLFKKYIAREIECIKLKDVSFKSLSESEVLNVIK  240

Query  241  RSRCILDVVHPKQNGLTIRTIEALGANKKIITTNRNVVKYDFYNPSNILVLDDTVNDVAI  300
            RSRCILDVVHPKQNGLTIRTIEALGANKKIITTNRNVVKYDFYNPSNILVLDDTVNDVAI
Sbjct  241  RSRCILDVVHPKQNGLTIRTIEALGANKKIITTNRNVVKYDFYNPSNILVLDDTVNDVAI  300

Query  301  AKFINQEYVHPDDEIYQSYYIENWVKDLLRE  331
            AKFINQEYVHPDDEIYQSYYIENWVKDLLRE
Sbjct  301  AKFINQEYVHPDDEIYQSYYIENWVKDLLRE  331


>ref|YP_002391830.1| hypothetical protein ECS88_2135 [Escherichia coli S88]
 emb|CAN87669.1| conserved hypothetical protein [Escherichia coli]
 emb|CAR03422.1| conserved hypothetical protein [Escherichia coli S88]
Length=332

 Score =  186 bits (472),  Expect = 3e-47, Method: Compositional matrix adjust.
 Identities = 122/328 (37%), Positives = 187/328 (57%), Gaps = 23/328 (7%)

Query  16   VLIFCPKFFNYDINIRNAVQKNGYTVSLFNERPFDNIIGRALIRLGFDFFLKRQIFKYYK  75
            VL   PKFFNY+  I   ++     V  ++ERP +N I ++L+RLG    +K+    YYK
Sbjct  7    VLFISPKFFNYEKEIVKELELTN-DVIYWDERPSNNAIYKSLLRLGCSILIKKYNSSYYK  65

Query  76   NIYDNIF-ADIDYLIVINPECITPEILEI------YRNKCNNIIVYMWDSFENKPQAKKL  128
             +   I    ID + ++NPE I  EIL+        +N+    I+Y+WDS  NKP+ K++
Sbjct  66   KLLRQIVNKKIDNVFILNPEAIDHEILQAIKKTVKVKNEHCKFIMYLWDSVNNKPKVKRI  125

Query  129  IRHADLFYTFDPNDAKNNNIIFKPLFYTKAYREIPSKPQLEYDISFIGTIHSSRYQYVKS  188
            I   D  +TF+ +DA+   + F PLFY+  + +   +  L+YD+ FIGT HS R   V  
Sbjct  126  INQFDSVFTFERDDAEKWGVTFLPLFYSPRF-DNKHEHSLKYDLCFIGTAHSDRVDLVNC  184

Query  189  I-ATVKN-----KFIFFYCPSLFVFLFKKYIA-REIECIKLKDVSFKSLSESEVLNVIKR  241
            I A V+N      + FFY  +  +F  K  ++ ++I      DV F+ LS+SEV+ ++K 
Sbjct  185  ITAEVRNIKDINAYTFFYFQNEIIFKLKNLLSGKKINT----DVEFEPLSQSEVVEMMKC  240

Query  242  SRCILDVVHPKQNGLTIRTIEALGANKKIITTNRNVVKYDFYNPSNILVLDDTVNDVAIA  301
            S  I+D+ HP+Q GLT+RTIE +G NKKIITTN ++ KYDFY+P+ I V+      +   
Sbjct  241  SEIIIDIHHPRQRGLTMRTIECIGLNKKIITTNEDIKKYDFYDPNMICVVKRH-QVIVPE  299

Query  302  KFINQEYVHPDDEIYQSYYIENWVKDLL  329
             FIN   V+  +   + Y ++ WVK ++
Sbjct  300  NFINAPNVNYKNR--EQYSLQQWVKKII  325


>gb|AAX07749.1| unknown [Escherichia coli]
Length=336

 Score =  159 bits (401),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 172/327 (52%), Gaps = 17/327 (5%)

Query  16   VLIFCPKFFNYDINIRNAVQKNGYTVSLFNERPFDNIIGRALIRLG-FDFFLKRQIFKYY  74
            VL  CP+FFNY+  I + +++ G TV  F+E+PF+N+  + L+RL   + F+KR    Y+
Sbjct  3    VLFLCPRFFNYENEISDGLRRTGATVDYFDEKPFNNVFFKILLRLWKGNNFIKRISDAYF  62

Query  75   KNIYDNIFADIDYLIVINPECITPEILEIYRNKCNN--IIVYMWDSFENKPQAKKLIRHA  132
            + I      D DY+IV+  E +  + L  ++NK  N   I Y WDS +N P  ++ +   
Sbjct  63   EKILLQTNDDYDYVIVLKGESLDRKNLLKFKNKYKNAKFIYYAWDSIKNYPHIQECLNLF  122

Query  133  DLFYTFDPNDAKNNNIIFK-PLFYTKAYREIPSKPQ---LEYDISFIGTIHSSRYQYVKS  188
            D  +TFD NDA+  + +   PLFY+  +     K      +  I+F+GT+HS RY+ +  
Sbjct  123  DRVFTFDDNDAREYDFMTHLPLFYSPDFVSTAKKEASKNFKPSIAFLGTVHSDRYRVLGE  182

Query  189  I-ATVKNKF---IFFYCPSLFV---FLFKKYIAREIECIKLKDVSFKSLSESEVLNVIKR  241
            +    KN++      Y PS+ V   FL   +  + I   KL   + +S S+ ++ +    
Sbjct  183  VYEKYKNEYDLRFVLYFPSIVVLVGFLLTNF--KSIIRFKLFSFTLRSRSKKQIASFFSS  240

Query  242  SRCILDVVHPKQNGLTIRTIEALGANKKIITTNRNVVKYDFYNPSNILVLDDTVNDVAIA  301
            +  +LD+ HP+Q GLT+RTIE L   +K ITTN  V  YDFY+  N   +D   N +  +
Sbjct  241  ADAVLDIQHPRQTGLTMRTIECLPLKRKFITTNSRVKNYDFYSAENFYFIDRD-NILIDS  299

Query  302  KFINQEYVHPDDEIYQSYYIENWVKDL  328
             F    Y     +    Y I++WVK L
Sbjct  300  DFFEIPYNDAHLDAISRYSIDSWVKTL  326


>ref|YP_001463381.1| hypothetical protein EcE24377A_2321 [Escherichia coli E24377A]
 gb|ABV20316.1| conserved hypothetical protein [Escherichia coli E24377A]
Length=295

 Score = 43.9 bits (102),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 60/103 (58%), Gaps = 4/103 (3%)

Query  229  SLSESEVLNVIKRSRCILDVVHPKQNGLTIRTIEALGANKKIITTNRNVVKYDFYNPSNI  288
            ++S  E +N ++ ++ IL+V    Q GLT+R++E++  ++K+I+ N +++  DFY+ S I
Sbjct  193  AISYKENINKVQENKYILEVNTVGQVGLTLRSLESIFYSRKLISNNIDLMNCDFYDKSRI  252

Query  289  LVLDDTVNDVAIA---KFINQEYVHPDDEIYQSYYIENWVKDL  328
             + ++  ND+  +   +FI   Y   ++ I + Y   N  K L
Sbjct  253  FIFNNP-NDLFSSDFDEFIRLPYKPVENVILEKYKASNIFKKL  294


>ref|NP_418086.1| lipopolysaccharide core biosynthesis protein [Escherichia coli 
str. K-12 substr. MG1655]
 ref|AP_004162.1| lipopolysaccharide core biosynthesis protein [Escherichia coli 
str. K-12 substr. W3110]
 ref|YP_001732457.1| lipopolysaccharide core biosynthesis protein [Escherichia coli 
str. K-12 substr. DH10B]
 ref|YP_002928516.1| lipopolysaccharide core biosynthesis protein [Escherichia coli 
BW2952]
 sp|P27126.1|RFAS_ECOLI RecName: Full=Lipopolysaccharide core biosynthesis protein rfaS
 gb|AAA24084.1| lipopolysaccharide core biosynthesis protein [Escherichia coli]
 gb|AAB18606.1| rfaS [Escherichia coli str. K-12 substr. MG1655]
 gb|AAC76653.1| lipopolysaccharide core biosynthesis protein [Escherichia coli 
str. K-12 substr. MG1655]
 dbj|BAE77663.1| lipopolysaccharide core biosynthesis protein [Escherichia coli 
str. K12 substr. W3110]
 gb|ACB04679.1| lipopolysaccharide core biosynthesis protein [Escherichia coli 
str. K12 substr. DH10B]
 gb|ACR63662.1| lipopolysaccharide core biosynthesis protein [Escherichia coli 
BW2952]
Length=311

 Score = 40.8 bits (94),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query  228  KSLSESEVLNVIKRSRCILDVVHPKQNGLTIRTIEALGANKKIITTNRNVVKYDFYNPSN  287
            K +S  E +     +  I+D+    Q+G T+R +EAL  NKK+IT N NV   + Y+ S 
Sbjct  205  KQISYEENIRRTLNANIIVDITKENQSGWTLRILEALFFNKKLITNNINVFGSEIYSESR  264

Query  288  ILVLDDTVNDVAIAKFINQEYVHPDDEIYQSYY  320
              ++     D  +  FIN   V P D  Y S Y
Sbjct  265  FFIIGHDDWD-KLEYFINSS-VKPMD--YDSLY  293


>ref|YP_002331339.1| lipopolysaccharide core biosynthesis protein [Escherichia coli 
O127:H6 str. E2348/69]
 emb|CAS11425.1| lipopolysaccharide core biosynthesis protein [Escherichia coli 
O127:H6 str. E2348/69]
Length=311

 Score = 40.8 bits (94),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query  242  SRCILDVVHPKQNGLTIRTIEALGANKKIITTNRNVVKYDFYNPSNILVLDDTVNDVAIA  301
            +  I+D+    Q+G T+R +EAL  NKK+IT N NV+  + Y+ S   ++     D  + 
Sbjct  219  ANIIVDITKENQSGWTLRILEALFFNKKLITNNINVLGSEIYSESRFFIIGHDDWD-KLE  277

Query  302  KFINQEYVHPDDEIYQSYY  320
             FIN   V P D  Y S Y
Sbjct  278  YFINSS-VKPMD--YDSLY  293



  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Jun 16, 2009  5:41 PM
  Number of letters in database: 26,573,871
  Number of sequences in database:  84,272

Lambda     K      H
   0.325    0.143    0.427 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 84272
Number of Hits to DB: 2337059
Number of extensions: 94338
Number of successful extensions: 242
Number of sequences better than 0.1: 0
Number of HSP's better than 0.1 without gapping: 0
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 0
Length of query: 331
Length of database: 26573871
Length adjustment: 104
Effective length of query: 227
Effective length of database: 17809583
Effective search space: 4042775341
Effective search space used: 4042775341
T: 11
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 80 (35.4 bits)
Job Title: gb|AAZ20765| (331 letters)
