NCBI Blast:gb|<a href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&id=ABF01012">ABF01012</a>| (305 letters)

BLASTP 2.2.21+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro
A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new
generation of protein database search programs", Nucleic
Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen
F. Altschul, John C. Wootton, E. Michael Gertz, Richa
Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and
Yi-Kuo Yu (2005) "Protein database searches using
compositionally adjusted substitution matrices", FEBS J.
272:5101-5109.


RID: 3H88GT2B016


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
           9,090,450 sequences; 3,112,979,771 total letters
Query= gi|93211202|gb|ABF01012.1| wbeY [Escherichia coli]
Length=305


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gb|ABF01012.1|  wbeY [Escherichia coli]                             630    0.0   
gb|ACK44381.1|  glycosyltransferase [Escherichia coli]              626    1e-179
gb|ACD37049.1|  WfdK [Escherichia coli]                             233    2e-61 
ref|ZP_03002988.1|  WfbU [Escherichia coli 53638] >gb|ACD37141...   218    6e-57 
gb|ACD37048.1|  WfdJ [Escherichia coli]                            68.2    1e-11 
ref|YP_001744312.1|  glycosyl transferase, group 2 family prot...  58.2    1e-08 
ref|ZP_04004894.1|  rhamnosyl transferase [Escherichia coli 83...  45.4    8e-05 
ref|ZP_03068240.1|  putative WbuM [Escherichia coli 101-1] >gb...  43.5    3e-04 
gb|ACD37163.1|  RfbF [Escherichia coli] >gb|ACD37179.1| RfbF [...  41.6    0.001 
gb|ACD37171.1|  RfbF [Escherichia coli]                            41.6    0.001 
gb|AAZ85719.1|  glycosyltransferase [Escherichia coli]             40.8    0.002 

ALIGNMENTS
>gb|ABF01012.1| wbeY [Escherichia coli]
Length=305

 Score =  630 bits (1625),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 305/305 (100%), Positives = 305/305 (100%), Gaps = 0/305 (0%)

Query  1    MSITNKTIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRK  60
            MSITNKTIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRK
Sbjct  1    MSITNKTIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRK  60

Query  61   NINIKYHNTGYNAGGAGGFYIGSKMAYEDGWDRIWLADDDIVLDKECLSNAMEYDDGRTI  120
            NINIKYHNTGYNAGGAGGFYIGSKMAYEDGWDRIWLADDDIVLDKECLSNAMEYDDGRTI
Sbjct  61   NINIKYHNTGYNAGGAGGFYIGSKMAYEDGWDRIWLADDDIVLDKECLSNAMEYDDGRTI  120

Query  121  LQPMRYNMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFNKNILSYDIQSIPFEGPIIPR  180
            LQPMRYNMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFNKNILSYDIQSIPFEGPIIPR
Sbjct  121  LQPMRYNMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFNKNILSYDIQSIPFEGPIIPR  180

Query  181  EVFNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVRKIPFVQSVALKTWKGYF  240
            EVFNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVRKIPFVQSVALKTWKGYF
Sbjct  181  EVFNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVRKIPFVQSVALKTWKGYF  240

Query  241  MFRNYFRVQKVYGLSPLIYLRILLVFCLALGHSLVRMDINSIKMLCGALKDGLSQEFKLT  300
            MFRNYFRVQKVYGLSPLIYLRILLVFCLALGHSLVRMDINSIKMLCGALKDGLSQEFKLT
Sbjct  241  MFRNYFRVQKVYGLSPLIYLRILLVFCLALGHSLVRMDINSIKMLCGALKDGLSQEFKLT  300

Query  301  EKYKP  305
            EKYKP
Sbjct  301  EKYKP  305


>gb|ACK44381.1| glycosyltransferase [Escherichia coli]
Length=305

 Score =  626 bits (1614),  Expect = 1e-179, Method: Compositional matrix adjust.
 Identities = 303/305 (99%), Positives = 304/305 (99%), Gaps = 0/305 (0%)

Query  1    MSITNKTIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRK  60
            MSITNKTIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRK
Sbjct  1    MSITNKTIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRK  60

Query  61   NINIKYHNTGYNAGGAGGFYIGSKMAYEDGWDRIWLADDDIVLDKECLSNAMEYDDGRTI  120
            NINIKYHNTGYNAGGAGGFYIGSKMAYEDGWDRIWLADDDIVLDKECL+NAMEYDDGRTI
Sbjct  61   NINIKYHNTGYNAGGAGGFYIGSKMAYEDGWDRIWLADDDIVLDKECLNNAMEYDDGRTI  120

Query  121  LQPMRYNMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFNKNILSYDIQSIPFEGPIIPR  180
            LQPMRYNMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFNKNILSYDIQSIPFEGPIIPR
Sbjct  121  LQPMRYNMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFNKNILSYDIQSIPFEGPIIPR  180

Query  181  EVFNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVRKIPFVQSVALKTWKGYF  240
            EVFNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVRKIPFVQSVALKTWKGYF
Sbjct  181  EVFNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVRKIPFVQSVALKTWKGYF  240

Query  241  MFRNYFRVQKVYGLSPLIYLRILLVFCLALGHSLVRMDINSIKMLCGALKDGLSQEFKLT  300
            MFRNYFRVQKVYG SPLIYLRILLVFCLALGHSLVRMDINSIKMLCGALKDGLSQEFKLT
Sbjct  241  MFRNYFRVQKVYGSSPLIYLRILLVFCLALGHSLVRMDINSIKMLCGALKDGLSQEFKLT  300

Query  301  EKYKP  305
            EKYKP
Sbjct  301  EKYKP  305


>gb|ACD37049.1| WfdK [Escherichia coli]
Length=300

 Score =  233 bits (595),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 120/303 (39%), Positives = 191/303 (63%), Gaps = 8/303 (2%)

Query  7    TIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRKNINIKY  66
            T+  ++VT+NRC LL ++L S+ + S+  + + +IDN+S+D+T+ VV +     +I   Y
Sbjct  2    TVIAIVVTFNRCALLKKVLHSLLSQSIALNKIIIIDNDSNDDTAKVVHDFSEVDDI-FYY  60

Query  67   HNTGYNAGGAGGFYIGSKMAYEDGWDRIWLADDDIVLDKECLSNAMEYDDGRTILQPMRY  126
            +NTG N GGAGGFY G K+A +  +D +WL DDD++ + +CL   ++ D    I+QP+RY
Sbjct  61   YNTGDNLGGAGGFYQGFKIAEQLYYDYLWLMDDDLLPEPDCLEKLIQ-DRPEGIVQPVRY  119

Query  127  NMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFNK----NILSYDIQSIPFEGPIIPREV  182
            ++DG+CAEIS ++Y+L   F   PK KTV+ + +     N    DI  +PFEGP+I + V
Sbjct  120  DLDGACAEISPVEYNLQKIFCRNPKTKTVKEVISTVISDNCREIDIAGVPFEGPLISKSV  179

Query  183  FNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVRKIPFVQSVALKTWKGYFMF  242
             N +G+P+  FFIFNDDLD+++R +  GFSIKCI +A+  R +   Q   LK+WKGYFM 
Sbjct  180  VNKVGYPNPDFFIFNDDLDYSLRTRSKGFSIKCIVDARATRLLKNNQKNDLKSWKGYFML  239

Query  243  RNYFRVQKVYGLSPLIYLRILLVFCLALGHSLVRMDINSIKMLCGALKDGLSQEFKLTEK  302
            RN++ + + YG + L+  R+ L+       S+   D    K++  + KD  S   K +++
Sbjct  240  RNHYYILRNYGENKLVKNRVYLIMFYYFLKSVFSFDYKFAKVVIFSFKDSFS--LKNSKR  297

Query  303  YKP  305
            ++P
Sbjct  298  FRP  300


>ref|ZP_03002988.1| WfbU [Escherichia coli 53638]
 gb|ACD37141.1| WfeT [Escherichia coli]
 gb|ACD37149.1| WfeT [Escherichia coli]
 gb|EDU66020.1| WfbU [Escherichia coli 53638]
Length=304

 Score =  218 bits (555),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 124/307 (40%), Positives = 186/307 (60%), Gaps = 15/307 (4%)

Query  5    NKTIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRKNINI  64
            NK +  VIVTYNR  LL++++ ++ N S     + +IDNNS+D T   ++   +R +  +
Sbjct  2    NKEVIAVIVTYNRKALLLKVIDAVINQSYPLKKILIIDNNSTDGTEMFIS---NRLSDVV  58

Query  65   KYHNTGYNAGGAGGFYIGSKMAYEDGWDRIWLADDDIVLDKECLSNAMEYDDGRTILQPM  124
            KY NTG N GGAGGFY G   A + G+D +WL DDD +    CL   +  +    I+QP+
Sbjct  59   KYKNTGDNLGGAGGFYRGFIEAEKYGYDYLWLMDDDFMPTVNCLEILIS-NSPDGIVQPV  117

Query  125  RYNMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFN---KNILSYDIQSIPFEGPIIPRE  181
            RYN+D +CAE+S + YDLSNPF L PK   ++N  N         DI++IPFEGP+I R+
Sbjct  118  RYNLDETCAELSPLTYDLSNPFKLNPKGTPLKNYLNTIGNKSAKVDIEAIPFEGPLISRK  177

Query  182  VFNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVRKIPFVQSVALKTWKGYFM  241
            V   IG+P+ +FFIF DD+++AI+A+R G  I+C   AK  R +   Q   L +WKGYFM
Sbjct  178  VVEKIGYPEPKFFIFCDDIEYAIKAKRKGIPIQCNLKAKAYRLLVNNQGNDLLSWKGYFM  237

Query  242  FRNYFRVQKVYGLSPLIYLRILLVFCLALGHSL---VRMDINSIKMLCGALKDGLSQEFK  298
             RN F + K YG + L+  + ++   L LG++L   ++ + + + ++  A  D  S   +
Sbjct  238  LRNLFYLHKTYGTNFLVRQKPIV---LGLGYALSCVLKCNFSQLPVIWRAFWD--SSTLR  292

Query  299  LTEKYKP  305
             TEK++P
Sbjct  293  NTEKFRP  299


>gb|ACD37048.1| WfdJ [Escherichia coli]
Length=319

 Score = 68.2 bits (165),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 137/325 (42%), Gaps = 49/325 (15%)

Query  7    TIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNT--------------SSV  52
            ++++ IVT+NR N L+  L ++   S     + + DN S+D T              S++
Sbjct  3    SVSVCIVTFNRKNDLLRCLDNVLKQSHVVSNILIYDNASTDGTTRFLLSKYCAILSPSNI  62

Query  53   VTECDSRKNINIKYHNTGYNAGGAGGFYIGSKMAYE--DGWDRIWLADDDIVLDKECLSN  110
              +  +  +INI       N+GGAGGF+    ++ E  D  D  WL DDD    K+CL+ 
Sbjct  63   PQKIATLNDINIWLVTATENSGGAGGFHYSVILSREIFDT-DYYWLMDDDGYPSKDCLNI  121

Query  111  AMEYDDGRTILQPMRYNMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFNKNILSY-DIQ  169
             M+Y +       M  ++D    E       LS P   R K       + +   S+ D+ 
Sbjct  122  LMQYAETHNSDYVMPVSIDIDNNE------QLSWP--TRKKNHAKTECYKELYESWGDVM  173

Query  170  S--IPFEGPIIPREVFNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVR----  223
                PF G ++ ++  + +G+ ++ FFI+ D+ +   R +++      I NAK       
Sbjct  174  DYVTPFNGSLLSKKCIDSVGYVNKDFFIWGDEYEHYWRCKKSRIHPVTIMNAKFYHPSQK  233

Query  224  -----------KIPFVQSVALKTWKGYFMFRNYFRVQKVYGLSPLIYLRILLVFCLALGH  272
                       K+P+V S      +   + RNY  + K Y     I L+++      L  
Sbjct  234  LPLQPCFFGLIKLPYVDSPL----RMVCLVRNYTYIYKKYDSKLKIILKLISYSWFFLIT  289

Query  273  SLVRMDINSIKMLCGALKDGLSQEF  297
               ++D     +   ++ DGL  +F
Sbjct  290  R--KLDAKGFVLYLKSVLDGLRNDF  312


>ref|YP_001744312.1| glycosyl transferase, group 2 family protein [Escherichia coli 
SMS-3-5]
 gb|ACB16628.1| glycosyl transferase, group 2 family protein [Escherichia coli 
SMS-3-5]
Length=296

 Score = 58.2 bits (139),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 112/256 (43%), Gaps = 30/256 (11%)

Query  11   VIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRKNINIKYHNTG  70
            +IVT+NR   L + ++  E + +    + +++N S+D TS  +      + I +   N  
Sbjct  6    LIVTFNRLEKLKKTVA--ETVKLHFTSIVIVNNGSTDGTSDWLQTITDPRVIVL---NLA  60

Query  71   YNAGGAGGFYIGSKM---AYEDGWDRIWLADDDI-----VLDKECLSNAMEYDDGRTILQ  122
             N GGAGGF  GS+    + +  W  ++  DDD      +LDK    N    +D R    
Sbjct  61   SNNGGAGGFKAGSQYICSSVDSDW--VFFYDDDAYPQSDILDKFATINK---EDCRVFTA  115

Query  123  PMRYNMDGSCA---EISAIQYDLSNPF-YLRPKRKTVQNIFNKNILSYDIQSIPFEGPII  178
             ++     +CA       +    S+   Y++  ++ V +  NK +L   +Q++ F G II
Sbjct  116  LVKDLQGRTCAMNVPFVKVPTSFSDTLQYIKHPQRYVPD--NKKML---VQTVSFVGMII  170

Query  179  PREVFN--VIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVRKIPFVQSVALKTW  236
             REV N  +    DE F  F DDL F  +   +G  I           +     V    W
Sbjct  171  KREVLNEHLHHIYDELFLYF-DDLYFGYQLTLSGEKITYQPELVFTHDVSIQGKVISPEW  229

Query  237  KGYFMFRNYFRVQKVY  252
            K Y++ RN    ++++
Sbjct  230  KVYYLCRNLILAKRIF  245


>ref|ZP_04004894.1| rhamnosyl transferase [Escherichia coli 83972]
 gb|EEJ45905.1| rhamnosyl transferase [Escherichia coli 83972]
Length=321

 Score = 45.4 bits (106),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 50/249 (20%), Positives = 105/249 (42%), Gaps = 34/249 (13%)

Query  8    IALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTE------CDSRKN  61
            I +V++ +N     +  + S+ N++     + V+DN S+DN+   + E         +  
Sbjct  2    IYIVVLNWNGAIDTINCVKSLMNLNYDDYKIIVVDNCSTDNSYDSIKENLNALYITGKSF  61

Query  62   INIKYHN----------------TGYNAGGAGGFYIGSKMAY-EDGWDRIWLADDDIVLD  104
            I +KY +                +  N G A G  IG ++A  ++    +W+ ++D  +D
Sbjct  62   IEVKYEDRSKYQTLENDKIILIQSPKNNGYASGNNIGIELALNQEDMKYVWVLNNDTEVD  121

Query  105  KECLSNAMEYDDGRTIL----QPMRYNMDGSCAEISAIQYDLSNPFYLRPKR----KTVQ  156
            KE L++ +   D    +      + Y  D    E+      + N +    K     + V 
Sbjct  122  KEALTHLISKCDSDKNIGICGSRLVYFTD---REMQQGLGGVHNRWLCTTKNYEMGRLVS  178

Query  157  NIFNKNILSYDIQSIPFEGPIIPREVFNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCI  216
              ++  ++S +I  I        RE    +G  +E +F++ ++LD  +RA+   F +   
Sbjct  179  KKYDDEVISNNIDYIIGASMFFSRECLETVGLMNEEYFLYYEELDICLRAKAKNFKLGIC  238

Query  217  TNAKIVRKI  225
            +++ +  KI
Sbjct  239  SDSLVYHKI  247


>ref|ZP_03068240.1| putative WbuM [Escherichia coli 101-1]
 gb|EDX40851.1| putative WbuM [Escherichia coli 101-1]
Length=292

 Score = 43.5 bits (101),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 8/135 (5%)

Query  1    MSITNKTIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRK  60
            M   +  ++++I++YN    + + + S+   + K   + ++DNNSSDNT  ++ +     
Sbjct  1    MQYQSDRVSIIIISYNHEQFIEKAIESVLFQTYKDIELIIVDNNSSDNTREILNQYKDVY  60

Query  61   NINIKYHNTGYNAGGAGGFYIGSKMAYEDGWDRIWLADDDIVLDK--ECLSNAM--EYDD  116
            NI + Y     N G  GG  I   + Y  G    + A DDI++    E   NA+  E + 
Sbjct  61   NIKVIYLEN--NTGITGG--INEGLKYVSGEFVSFFASDDIMVSNRIELQVNALRKEPEA  116

Query  117  GRTILQPMRYNMDGS  131
                   +R N DGS
Sbjct  117  IACFGNMLRINSDGS  131


>gb|ACD37163.1| RfbF [Escherichia coli]
 gb|ACD37179.1| RfbF [Escherichia coli]
Length=296

 Score = 41.6 bits (96),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 28/228 (12%)

Query  5    NKTIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRKNINI  64
            N  I  VIVTYN    L  + + I  +  +   V V+DN+++      + + +    I +
Sbjct  2    NSNIYAVIVTYNP--ELKNLNALITELKEQNCYVVVVDNSTNFTLKDKLADIEKVHLICL  59

Query  65   KYHNTGYNAGGAGGFYIGSKMAYEDGWDRIWLADDDIVLDKECLSNAMEYDDGRTILQPM  124
                 G N G A    IG + + E G ++I   D D  +  E +     Y          
Sbjct  60   -----GRNEGIAKAQNIGIRYSLEKGAEKIIFFDQDSRIRNEFIKKLSCY----------  104

Query  125  RYNMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFNKNILSYDIQSIPFE-------GPI  177
               MD   A+I+   +   +  +  P     +N   + I   + Q+ PF+       G +
Sbjct  105  ---MDNENAKIAGPVFIDRDKSHYYPICNIKKNGLREKIHVTEGQT-PFKSSVTISSGTM  160

Query  178  IPREVFNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVRKI  225
            + +EVF ++G  DE  FI   D ++ +R    G  +  I + ++V  I
Sbjct  161  VSKEVFEIVGMMDEELFIDYVDTEWCLRCLNYGILVHIIPDIEMVHAI  208


>gb|ACD37171.1| RfbF [Escherichia coli]
Length=296

 Score = 41.6 bits (96),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 28/228 (12%)

Query  5    NKTIALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRKNINI  64
            N  I  VIVTYN    L  + + I  +  +   V V+DN+++      + + +    I +
Sbjct  2    NSNIYAVIVTYNP--ELKNLNALITELKEQNCYVVVVDNSTNFTLKDKLADIEKVHLICL  59

Query  65   KYHNTGYNAGGAGGFYIGSKMAYEDGWDRIWLADDDIVLDKECLSNAMEYDDGRTILQPM  124
                 G N G A    IG + + E G ++I   D D  +  E +     Y          
Sbjct  60   -----GRNEGIAKAQNIGIRYSLEKGAEKIIFFDQDSRIRNEFIKKLSCY----------  104

Query  125  RYNMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFNKNILSYDIQSIPFE-------GPI  177
               MD   A+I+   +   +  +  P     +N   + I   + Q+ PF+       G +
Sbjct  105  ---MDNENAKIAGPVFIDRDKSHYYPICNIKKNGLREKIHVTEGQT-PFKSSVTISSGTM  160

Query  178  IPREVFNVIGFPDERFFIFNDDLDFAIRAQRAGFSIKCITNAKIVRKI  225
            + +EVF ++G  DE  FI   D ++ +R    G  +  I + ++V  I
Sbjct  161  VSKEVFEIVGMMDEELFIDYVDTEWCLRCLNYGILVHIIPDIEMVHAI  208


>gb|AAZ85719.1| glycosyltransferase [Escherichia coli]
Length=290

 Score = 40.8 bits (94),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 114/265 (43%), Gaps = 42/265 (15%)

Query  8    IALVIVTYNRCNLLMEMLSSIENMSVKPDIVYVIDNNSSDNTSSVVTECDSRKNINIKYH  67
            + +VIV YN     +E + S+ N S     + ++DN++ +N    + E  +  + NI Y 
Sbjct  3    VGVVIVWYNPTKAQIENVYSLANTSELK--ICIVDNSNDEN----LFEKKTLSSKNISYI  56

Query  68   NTGYNAGGAGGFYIG-SKMAYEDGWDRIWLADDDIVLDKECLSNAMEY--DDGRTILQPM  124
            +     G AG F  G +K+  E     I+  D D  L ++   +  ++  D+   I  P 
Sbjct  57   HNSNKGGIAGAFNRGINKLFAERTMKHIFTMDQDSELSEDYFLSMWKFVRDNNCEIACPN  116

Query  125  RYNMDGSCAEISAIQYDLSNPFYLRPKRKTVQNIFNKNILSYDIQSIPFEGPIIPREVFN  184
             Y+ +   ++      +L+ PF+ +          N    ++ I S    G I  R+ + 
Sbjct  117  FYDRN---SKTYGTFINLT-PFFYKA--------VNNGTTTFCISS----GMIFSRKAWE  160

Query  185  VIGFPDERFFIFNDDLDFAIRAQRAGFSI-----KCITNAKIVRKIPFVQSVALKT----  235
            ++G  DER  I + D D+ ++A     +I     +C+ +A   R+   +  V LK     
Sbjct  161  ILGDFDERLIIDHVDTDYCLKANNHKVTILVNYEQCLNHAIGERESHRILGVTLKPNHHN  220

Query  236  -WKGYFMFRN-------YFRVQKVY  252
              + Y++ RN       YF+  K Y
Sbjct  221  YIRKYYIVRNGTYLALKYFKFSKGY  245



  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Jun 16, 2009  5:41 PM
  Number of letters in database: 26,573,871
  Number of sequences in database:  84,272

Lambda     K      H
   0.324    0.140    0.421 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 84272
Number of Hits to DB: 606834
Number of extensions: 24835
Number of successful extensions: 51
Number of sequences better than 0.1: 3
Number of HSP's better than 0.1 without gapping: 0
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 3
Length of query: 305
Length of database: 26573871
Length adjustment: 103
Effective length of query: 202
Effective length of database: 17893855
Effective search space: 3614558710
Effective search space used: 3614558710
T: 11
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 80 (35.4 bits)
Job Title: gb|ABF01012| (305 letters)
