Bioorganic Chemistry

Serogroup

O55

Serotype

O55:H6

Strain

ECODAB#

130

Structure

Unknown

CarbBank

LinucsID

Non-sugar components

Comments

Identical to

Cross-reacts with

¹H-NMR

Conditions

Solvent: not stated; Temp.:

Reference

not stated=ppm

Comment

¹³C-NMR

Conditions

Solvent: not stated; Temp.:

Reference

not stated=ppm

Comment

wzx (flippase)

TrEMBL entry

B1B4W4

Sequence

MIKKMFSSGFIKNGISNYICVAWMGGVSIIVLPYYLHILGPQQWGIVAICISIQSLMYLADAGMSQIMPR DIARCNGKSRELYVIYKSFLHAYSLLAIIVFSLILVGSYFIIDFWLVLDFSLKKEVFICVVLLGLQFLFQ FPNNANIGYWNGTLQQHKSNIRQCFFFTLKHIVAICLVTKWPQAILYQSGFLLIAFLESTSNTIKILFSF DGNIKRQEKLSIGINKIFRESGVLSIAVAIGLLVTQLDRIVLSKYVDISDFGYYVLASTLAQYFLQLQYP LLRLFFPRLTVALNKQNILRLLYSIIIFCVFPCLIMVLISPFFLSLWLDNAEAESIIIWPLRLILIAIAI NSIYNIIYQIMLIKQKAIVILCINISSLLCVFPTIWLLSTRVGVLAGGIGWVLCSLIQLFISLLWLFKRK ESILL

wzy (polymerase)

TrEMBL entry

B1B4W5

Sequence

MFNKKYVVIIWGGVLSLLCSLPLSIQGGFDDSLVYYEQAIYIWNNGLLEGLSSIYHQTNKFEIGMGLFFY LQGFLGEGRFVFILLNLFLVNFLAVLIYLKINDEVRISPSLLCVTLMLMSYYVFSNNIYVWRSIICLYFL VLMIYSKTKYKKIIFIGLGLLFHYTFILFLCVYYFCRVNKIGKFKFVIVSIIISFIISNFLYWMSYASLF VSGGELSLFMSQDNEALKRLIISGTFLFLLLMINLESETNNWVLYKLSLFFCILSIFLCDNWQLSWRVFV PAAILGTAIILSNIKKKDSVVLLGITLSIIPTFRLIFNLLILGHP

Comment

From [1]

GT name	Position in gene sequence	Linkage number	Donor	Acceptor	Similar to	BLAST	Comments
WbgP	4	2	bDGlcNAc(1->	->3)aDGal	O55:H7 WbgP (ECODAB) O157 WbdN (ECODAB) O66 WfaC (ECODAB)	BAG11951	[1]
WbgO	3	3	bDGal(1->	->3)bDGlcNAc	O55:H7 WbgO (ECODAB) O126 WbsT (ECODAB) O127 WbiP (ECODAB) O86 WcmC (ECODAB) O128 WbsK (ECODAB) O86 :B7 WbwJ (ECODAB) O113 WbnA (ECODAB) O86:B7 WbwJ (ECODAB)	BAG11952	[1]
WbgN	2	4	aCol(1->	->2)bDGal	O55:H7 WbgN (ECODAB) O126 WbgL (ECODAB) O128 WbsJ (ECODAB) O86:B7 WbwK (ECODAB) O86:K62:H2 WbnK (ECODAB)		[1]
WbgM	1	1	aDGal(1->	->3)bDGalNAc	O55:H7 WbgM (ECODAB) O113 WbnE (ECODAB) O3 WclR (ECODAB) O40 WffO (ECODAB) O87 WfgO (ECODAB) O148 WbbG (ECODAB)	BAG11960	[1]

References

[1] Microbiology. (2008) , 559-570 [PubMed 18227260]

Edit this entry

Fri May 24 21:16:25 CEST 2013

Bioorganic Chemistry

The Widmalm Research Group