Bioorganic Chemistry

Serogroup

O146

Serotype

Strain

ECODAB#

133

Structure

Unknown

CarbBank

LinucsID

Non-sugar components

Comments

[1] Contains genetic information but no structure

Identical to

Cross-reacts with

¹H-NMR

Conditions

Solvent: not stated; Temp.:

Reference

not stated=ppm

Comment

¹³C-NMR

Conditions

Solvent: not stated; Temp.:

Reference

not stated=ppm

Comment

wzx (flippase)

TrEMBL entry

A6M9D5

Sequence

MSIKMKANTSNTKRLFFNSIIMYLRMILLMLITLYISRVTINTLGIEKFGLYSVISGFVLLAGVFTNILE STSQRFLSKSLGEGGNVSSIFESCISTHIVLSLIAALLIEMLGVWFINYKLRQDVISINEVYIIFHLSVI TFVVTVITSPFYAALISFENVNYYSIFTLCDVISKVVGISLAPQLPWEITINYAAMILITTLVNRVILTS CFVMRYPKLGCRPSLDFCQMKNILSFAVWNMWGGAATVLNSQGINIVINVFFGILFNSARAITSQINSAI LQLTNSIQLALNPQIVKSYFKDNSCYLNQLIICSGKINVYLTLLIICIFLPNINFLLTVWLGNFPVMTIL LIKLMFIELFINSFSASLSSLIQATGKIKIYQMVVGGVMLLNLPLCLLILSIFKEVEIVYLVAIFVALVC LVLRLIFVNMNSKINIVSYLTNVILPGGGIAFIIYLIQNRWLTEATDLLTALINILYTLFLYSVLIIVIG LNNTERCFVLKHCGFFNWMKNG

wzy (polymerase)

TrEMBL entry

A6M9D8

Sequence

MIFFLFRQYPLLKYSSIMNVSCLLFLIFVTFFIKRGVFSSGIFLFSLIFLSVHGLYSLYSGNDPVLISRF YIILILIIVSYYAAIKSISYINIFIFLAVTQAFVIIGLEAFMFLNFRFSDYSAIRNYFIDNQFGDIYTYN GFFYHIQIKGNALLLFSYMISFYLYNKTNNKLYLLSSMFLALAVLFCGNLAFYITFLIHAFIFLFLRKAR TYNQLLLKVFIFLITFGVFISYSGMEYLVKAYELKFQGANFSSMGTRFDQFNVLIDDLFENVLTALVGQG LGNIINVQTAVRNYSDYIYYELQAVYFLNQLGVLLFLLFVIINVILTLKFIKPIELRIVYMLYILYALVN PYMLDTNHVVVVFILVSLSSIFSKGGDCSYNGKKHISSYNYI

Comment

Wzx and wzy data from [1]

GT name	Position in gene sequence	Linkage number	Donor	Acceptor	Similar to	BLAST	Comments
WbwU	1		aDGalNAc(1-> aDGal(1->	->3)?DGalNAc	O87 WfgO (ECODAB) O32 WfeE (ECODAB) O55:H7 WbgM (ECODAB) O121 WbqI (ECODAB) O104 WbwB (ECODAB)	ABE98436	[1]
WbwV	2		aLRha(1->	->3)aLRha ->2)aLRha	O147 WfbY (ECODAB) O13 RfbF (ECODAB) O135 RfbF (ECODAB) O148 WbbQ (ECODAB) O150 WfgI (ECODAB) O2 WbbQ (ECODAB) O177 WbdY (ECODAB) O148 WbbR (ECODAB)	ABE98438	[1]
WbwW	3		bDGal(1->	->?)aDGalNAc ->?)aDGlcNAc	O174 WbcZ (ECODAB) O112ac WfeJ (ECODAB) O104 WbwC (ECODAB) O155 WclG (ECODAB) O117 WbeD (ECODAB) O107 WclZ (ECODAB) O147 WfbZ (ECODAB)	ABE98439	[1]

References

[1] Mol Cell Probes. (2007) 295-302 [PubMed 17452091]

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Fri May 24 05:20:08 CEST 2013

Bioorganic Chemistry

The Widmalm Research Group