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SerogroupO42 
SerotypeO42:K-:H37 
Strain 
ECODAB#135
Structure
Unknown 
CarbBank
LinucsID
Non-sugar components 
CommentsGT info indicates that the structure is probably very similar to O28. 
Identical to 
Cross-reacts with 
1H-NMR
 

    
ConditionsSolvent: not stated; Temp.: 

    
Referencenot stated=ppm

    
Comment

    

    
13C-NMR
 

    
ConditionsSolvent: not stated; Temp.: 

    
Referencenot stated=ppm

    
Comment

    

    
wzx (flippase)

    
TrEMBL entry 
						    
    

    
Sequence
MSLILTDFGFNLSSTEYIARNCQSKDKINKHIGAVFQIKILLIFLCVIFLYFLVNDQLQQFKIEFFFYSC
IAIIGQTFQSLWFFQGVEKMKRITLFLTISKFSYVILTFVIVKKPEQGRFVILAYALSQVIGALLSQYYM
RKEGYKYTPANLSSMLGVLRTSALFFWSRLAVSTYTTASTLVVGAAGHVQAGYYAASEQLYKAGQNITTP
VSQALYPYMTRAKNWALFFKMMSILTVVMITASLTAIWLSQWLIALIFGPEYIVSQNVFIVFMLALIVTF
VSTNFGYPVFSALGKVKVANYTVIFGALTHVVILGVLFCLGEISAYNVVRAVLFTEIVILILRMFFFVKL
YRREVK




    

    
wzy (polymerase)

    
TrEMBL entry 
						   
    

    
Sequence
MKQARIKPFSYLSLSFFVLFLIFLNISAVSFDEYLTDLQYSYAYVLFAISLVAVYYAQGESYTSLGFLFN
TCLFLFIGGRFIATTFGIDSESVFTLDFMTTYIPTSDEKLEIYTRVVSFQIFLNLGYLFLRKEDSLLNLN
KNDNSLPGRLLFLIVIVLFLLCLVEQYSMLSKAMSEGYLARYGDQAESYDAGAAFKYTLLFVFTGLLFAT
CKKKYIIINFMIYMTLATIIILIGARGAFVSTILMGVWLYGLNKKISLKKLSIIFLSLAGILLIIMNFSA
RGNYYSNELIDSLLRFLYDQGNTLAVVGYVRTITDYPVFAYISTFLPGSSFFASMFHGGSDLNSYMLSFP
AYANYVANPNMYFAGYGLGWSIISSVEMFSADILFIFCIFSVLIGMFLKFANEQAKRNSFWFGAVACLCA
KILFTARADIKTIIPLFMYYAIMYLIISTAMRILRQRYG




    

    
Commentfrom [1](Unpublished).
    

    

    

	

	  

	    GT name
	    Position in

	      gene sequence		
	    Linkage number
	    Donor
	    Acceptor
	    Similar to
	    BLAST
	    Comments
	  

	  

	    WbeS
	    1
	    3
	    (R)Gro-1-P(O->
	    ->4)bDGlcNAc
	     O28 WbeS (ECODAB)
	    ACK44378
	    glycerol phosphotransferase [1]
	  

	  

	    WbeX
	    2
	    2
	    bDGlcNAc(1->

	    ->3)bDGalf

	    O28 WbeX (ECODAB)

O112ab WfeF (ECODAB)

	    ACK44380
	    [1]
	  

	  

	    WbeY
	    3
	    1
	    bDGalf(1->

	    ->3)?DGlcNAc


	     O28 WbeY (ECODAB)

O167 WfdK (ECODAB)

O167 WfdJ (ECODAB)

	    ACK44381
	    [1]
	  

	  

	    
	    
	    
	    
	    
	    
	    
	    
	  

	  

	    
	    
	    
	    
	    
	    
	    
	    
	  

	  

	    
	    
	    
	    
	    
	    
	    
	    
	  

	  

	    
	    
	    
	    
	    
	    
	    
	    
	  

	

    

    

    

    
References
      
[1] Sequencing of the Escherichia coli O2, O28ac, O63 and O42 O antigen clusters and detection of pathogenic strains by multiplex PCR assays targeting virulence genes in the respective O-antigen gene clusters. Submitted (10-DEC-2008).
 


  

  
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Sun May 19 05:27:35 CEST 2013