Carbohydrate Chemistry
Home	Research	Analysis	ECODAB	CASPER	Ke3690

Web-resources for the Carbohydrate Chemist

1. Web-resources related to the primary structure of carbohydrates

1. IUPAC-IUBMB Nomenclature of Carbohydrates [9042704]
   www.chem.qmw.ac.uk/iupac/2carb/
   
2. LINUCS LInear Notation for Unique description of Carbohydrate Structure [11675023]
   www.dkfz-heidelberg.de/spec/linucs/
   
3. CCSD - Complex Carbohydrate Structure Database (CarbBank) [2623761]
   www.boc.chem.uu.nl/sugabase/databases.html
   
4. SugaBase [1473112]
   www.boc.chem.uu.nl/sugabase/databases.html
   
5. SweetDB [11752350]
   www.dkfz-heidelberg.de/spec2/sweetdb/
   links to PubMed, Subito, 3D-structure & Mass data
6. GlycoBase of USTL
   ustl.univ-lille1.fr/glycobase/

2. Tools for the analysis of NMR and MS

7. The CCRC Database for Xyloglucan Oligosaccharide NMR Data
   www.ccrc.uga.edu/web/specdb/nmr/xg/xgnmr.html
   
8. ECDB - E. coli O-antigen database
   www.casper.organ.su.se/ECDB/
   links to PubMed, CarbBank, CCUG, ATCC
9. GC-EIMS of Partially Methylated Alditol Acetates
   www.ccrc.uga.edu/web/specdb/ms/pmaa/pframe.html
   
10. Specarb - Raman spectra of carbohydrates
    www.models.kvl.dk/users/engelsen/specarb/specarb.html
    
11. CASPER - Computer Aided SPectrum Evaluation of Regular polysaccharides [9691437]
    www.casper.organ.su.se/casper/
    
12. GlycoFragments
    www.dkfz-heidelberg.de/spec/projekte/fragments/
    

3. Conformation of carbohydrates and glycoproteins

13. PDB - Protein Data Bank [10592235]
    www.rcsb.org/pdb/
14. Pdb2Linucs [15010309]
    www.dkfz-heidelberg.de/spec/pdb2linucs/
15. HIC-Up [10089488]
    alpha2.bmc.uu.se/hicup/
16. Image Library of Biological Macromolecules
    www.imb-jena.de/ImgLibPDB/pages/carb.html
17. Het-PDB Navi
    daisy.bio.nagoya-u.ac.jp/golab/hetpdbnavi.html
18. Monosaccharide Database
    www.cermav.cnrs.fr/databank/mono/
19. Disaccharide Database [9825523]
    www.cermav.cnrs.fr/databank/disaccharides/
20. GlycoMaps Database
    www.dkfz-heidelberg.de/spec/glycomaps/
21. SWEET-II
    www.dkfz-heidelberg.de/spec/sweet2/
22. Glydict [11971779]
    www.dkfz-heidelberg.de/spec/glydict/

4. Databases of Enzymes and Lectins

23. CAZy - Carbohydrate Active enZYmes [12023867]
    afmb.cnrs-mrs.fr/CAZY/acc.html
    links to NiceZyme (ExPASy), Taxonomy Browser (NBCI), Entrez Nucleotide/Protein (NBCI), TrEMBL (ExPASy), PDB
24. BPGD - Bacterial Polysaccharide Gene Database
    www.microbio.usyd.edu.au/BPGD/default.htm
25. 3D Lectin Database
    www.cermav.cnrs.fr/lectines/
    links to Medline, PDB, HSSP, SCOP
26. A genomics resource for Animal Lectins [9787635] & [11425795]
    ctld.glycob.ox.ac.uk/
27. Torkild's Lectin Page
    plab.ku.dk/tcbh/lectin-links.htm

5. Databases and prediction tools related to glycoproteins

28. O-GlycBase [9847232] & [8594592]
    www.cbs.dtu.dk/databases/OGLYCBASE/
29. FindMod [10356335]
    www.expasy.org/tools/findmod/
30. GlycoMod Tool/GlycanMass [11680880]
    www.expasy.org/tools/glycomod/
31. Glypeps - Accurate Mass & Peptide Modification [11114093]
    www.dkfz-heidelberg.de/spec/glypeps/
32. NetOGlyc [8948436]
    www.cbs.dtu.dk/services/NetOGlyc/
    
33. DictyOGlyc [10521537]
    www.cbs.dtu.dk/services/DictyOGlyc/
    
34. NetNGlyc
    www.cbs.dtu.dk/services/NetNGlyc/
    
35. YinOYang
    www.cbs.dtu.dk/services/YinOYang/
    
36. DGPI - Detection/prediction of GPI cleavage site
    129.194.185.165/dgpi/index_en.html
    
37. Big-PI Predictor [10497036]
    mendel.imp.univie.ac.at/sat/gpi/gpi_server.html
38. CarbDB
    web.mit.edu/glycomics/carb/carbdb.shtml
    Not yet available

Various - Unsorted

• Chemically Synthesized Oligosaccharides 1994: A Searchable Table of Glycosidic Linkages
  www.chem.ualberta.ca/~glyco/misc/Glycosylations/glycosyl_top.htm
• Index of Advances in Carbohydrate Chemistry and Biochemistry
  www.chemistry.ohio-state.edu/~lowary/advances.html www.chem.ualberta.ca/~glyco/misc/Advance/Advance.htm
• Proteoglycans and Glycosaminoglycans
  bssv01.lancs.ac.uk/gig/pages/toppage.htm
• FCCA GlycoWord
  www.glycoforum.gr.jp/science/word/wordE.html
• Glyco@LaCarte
  www.cermav.cnrs.fr/cours/smc_anglais/
• The Molecular Biology Database Collection: 2003 update
  www3.oup.co.uk/nar/database/
• Structural Analysis of Carbohydrates
  www.casper.organ.su.se/sop/
• NDB - Nucleic Acid Database
  ndbserver.rutgers.edu/
• DBUse
  www.ccdc.cam.ac.uk/dbuse/
• WWW-Guide to Cloned Glycosyltransferases
  www.netconferences.net/tgn/gt_guide.htm
  
• Glycotheca
  glyco.free.fr/
  
• Water structure and behavior
  www.lsbu.ac.uk/water/index.html
  Contains sections on saccharide hydration and conformation